scikit learn - Missing value imputation in python using KNN -
i have dataset looks this
1908 january 5.0 -1.4 1908 february 7.3 1.9 1908 march 6.2 0.3 1908 april nan 2.1 1908 may nan 7.7 1908 june 17.7 8.7 1908 july nan 11.0 1908 august 17.5 9.7 1908 september 16.3 8.4 1908 october 14.6 8.0 1908 november 9.6 3.4 1908 december 5.8 nan 1909 january 5.0 0.1 1909 february 5.5 -0.3 1909 march 5.6 -0.3 1909 april 12.2 3.3 1909 may 14.7 4.8 1909 june 15.0 7.5 1909 july 17.3 10.8 1909 august 18.8 10.7 i want replace nans using knn method. looked sklearns imputer class supports mean, median , mode imputation. there feature request here don't think thats been implemented of now. ideas on how replace nans last 2 columns using knn?
edit: since need run codes on environment, don't have luxury of installing packages. sklearn, pandas, numpy , other standard packages ones can use.
fancyimpute package supports such kind of imputation, using following api:
from fancyimpute import knn # x complete data matrix # x_incomplete has same values x except subset have been replace nan # use 3 nearest rows have feature fill in each row's missing features x_filled_knn = knn(k=3).complete(x_incomplete) here imputations supported package:
•simplefill: replaces missing entries mean or median of each column.
•knn: nearest neighbor imputations weights samples using mean squared difference on features 2 rows both have observed data.
•softimpute: matrix completion iterative soft thresholding of svd decompositions. inspired softimpute package r, based on spectral regularization algorithms learning large incomplete matrices mazumder et. al.
•iterativesvd: matrix completion iterative low-rank svd decomposition. should similar svdimpute missing value estimation methods dna microarrays troyanskaya et. al.
•mice: reimplementation of multiple imputation chained equations.
•matrixfactorization: direct factorization of incomplete matrix low-rank u , v, l1 sparsity penalty on elements of u , l2 penalty on elements of v. solved gradient descent.
•nuclearnormminimization: simple implementation of exact matrix completion via convex optimization emmanuel candes , benjamin recht using cvxpy. slow large matrices.
•biscaler: iterative estimation of row/column means , standard deviations doubly normalized matrix. not guaranteed converge works in practice. taken matrix completion , low-rank svd via fast alternating least squares.
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