R package, Seurat, interfering with ggplot2/plotly output -
i writing r script in rstudio looking @ single cell data , generating various graphs. package using ggplot2. generates nice graph outputs when seurat library not loaded: pure ggplot2 graph
then when seurat library imported, graph reverts ugliness: seurat interfered plot here list of imports seurat brings upon being included:
imports: methods, rocr, stringr, mixtools, lars, fastica, tsne, rtsne, fpc, ape, vgam, pbapply, igraph, fnn, caret, plyr, dplyr, rcolorbrewer, mass, matrix, irlba, reshape2, gridextra, gplots, gdata, rcpp, rcppeigen, rcppprogress, tclust, ranger
any thoughts on how have both libraries present without alterations in graph output?
solutions tried: - tried "detach("package:seurat", unload = true)" //did not revert plots upon closing , reloading rstudio , did not allow upstream code chunks provide ggplot2 normal graphing.
thanks.
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